SBGN Bricks Dictionary

The previous version of the dictionary is available at http://sbgnbricks.sourceforge.net.

Metabolic reaction
Catalysis
Protein phosphorylation
Inhition

Metabolism

Metabolic reaction

Associated GO terms: GO:0008152 metabolic process

Catalysis

Associated GO terms: GO:0003824 catalytic activity

Inhibition

Associated GO terms: GO:0043086 negative regulation of catalytic activity

Signalling

Protein phosphorylation

Associated GO terms: GO:0006468 protein phosphorylation; GO:0001934 positive regulation of protein phosphorylation; GO:0032147 activation of protein kinase activity


SBGN-ML
SBGN-ML
SBGN-ML

For the AF expression the assumption is that the phosporylation leads to the activity towards another entity (not shown). A different possible situation: phosphorylation leads to protein deactivation and then the activation arc in AF would need to be replaced by inhibition arc.

In a similar way other types of posttranslational modifications can be expressed:

Acetylation     Ac     SBO:0000215                 Palmytoylation     Pa     SBO:0000218
Glycosylation     G     SBO:0000217                 Prenylation     Pr     SBO:0000221
Hydroxylation     OH     SBO:0000233                 Protonation     H     SBO:0000212
Methylation     Me     SBO:0000214                 Sulfation     S     SBO:0000220
Myristoylation     My     SBO:0000219                 Ubiquitination     Ub     SBO:0000224