About
SBGN bricks are defined as the recurring biological paterns reflected in the SBGN languages: metabolic reaction, catalysis, inhibition, protein phosphorylation, complex formation, transcription, translation etc. The dictionary of SBGN bricks aligns biological concepts with their graphical expressions.
How to cite SBGN Bricks
Rougny A, Touré V, Albanese J, Waltemath D, Shirshov D, Sorokin A, Bader GD, Blinov ML, Mazein A. SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks. Brief Bioinform. 2021 Mar 24:bbab049. doi: 10.1093/bib/bbab049. Epub ahead of print. PMID: 33758926.
Junker A, Sorokin A, Czauderna T, Schreiber F, Mazein A. Wiring diagrams in biology: towards the standardized representation of biological information. Trends Biotechnol. 2012 Nov;30(11):555-7. doi:10.1016/j.tibtech.2012.08.003. Epub 2012 Sep 11. PMID: 22979995.
SBGN Bricks Ontology
Please use the new website to browse the SBGN Bricks Ontology.
Earlier versions
The first issue of the SBGN Bricks is available at http://sbgnbricks.sourceforge.net with the SBGN Bricks Dictionary at http://sbgnbricks.sourceforge.net/sbgnbricks_dictionary.html and examples provided here.
Contact
To contribute and discuss the project please use this email address:
sbgnbricks@googlegroups.com
SBGN Bricks Project Coordinator:
Alexander Mazein a.mazein@gmail.com
SBGN Bricks Ontology:
Adrien Rougny
ModelBricks Project Leaders:
Michael Blinov blinov@uchc.edu and Ann Cowan acowan@uchc.edu
Project Team
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Astrid Junker Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany |
Alexander Mazein Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Belvaux, Luxembourg |
Vasundra Toure Norwegian University of Science and Technology, Trondheim, Norway |
Adrien Rougny National Institute of Advanced Industrial Science and Technology, Tokyo, Japan |
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Falk Schreiber University of Konstanz, Konstanz, Germany |
Tobias Czauderna Monash University, Melbourne, Australia |
Anatoly Sorokin Institute of Cell Biophysics, Russian Academy of Science, Pushchino, Russia |
Denis Shirshov European Institute for Systems Biology and Medicine, Lyon, France |
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Michael Blinov UConn School of Medicine, Farmington, Connecticut, USA |
Emek Demir Oregon Health & Science University, Portland, USA |
Gary Bader University of Toronto, Toronto, Canada |
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